PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00203.1.p | ||||||||
Common Name | LOC105966614, MIMGU_mgv1a0156852mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16136.5 Da PI: 7.7183 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.4 | 6e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++++++++++ Migut.L00203.1.p 2 SCNGCRVLRKGCSDTCILRTCLqwidsADSQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVC 94 6*********************9999666889************************************************************* PP DUF260 89 qlkaelall 97 q+++e++l+ Migut.L00203.1.p 95 QTAVETVLR 103 ***999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.815 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDTCILR TCLQWIDSAD SQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGALKPI PELLGGASGD 120 DPDEASECTD MFRLRDPSPV SQKRRLFYG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846657.1 | 1e-107 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-73 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A022QT36 | 1e-106 | A0A022QT36_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L00203.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-76 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00203.1.p |
Entrez Gene | 105966614 |