PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00172.1.p
Common NameLOC105961093, MIMGU_mgv1a015596mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 153aa    MW: 16336.4 Da    PI: 10.1448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-172877255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Migut.L00172.1.p 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYYLRG 77
                      69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9832885IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-212887IPR016177DNA-binding domain
SMARTSM003803.5E-342891IPR001471AP2/ERF domain
CDDcd000189.70E-252986No hitNo description
PRINTSPR003672.2E-112940IPR001471AP2/ERF domain
PfamPF008471.5E-102977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-302986IPR001471AP2/ERF domain
PRINTSPR003672.2E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDGGGGGGAT AVIAGGARAV TRRRSDKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
AVAAARAYDT AVYYLRGPTA KLNFPDEISA GGLNDLSAAS IRKRAAEVGA RVDALQANGG  120
DGLPVKPSSF QDEIDLNKKP EPESEGPNLE YW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1629911578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00172.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840786.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SNE12e-47ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A022R6S41e-104A0A022R6S4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.14e-34cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]