PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.L00136.1.p | ||||||||
Common Name | MIMGU_mgv1a023679mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 279aa MW: 30753.8 Da PI: 5.272 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 33 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Migut.L00136.1.p 33 RGKFSQDEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 78 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-4 | 11 | 31 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-20 | 13 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.422 | 28 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 32 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 32 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-16 | 33 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-12 | 35 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRMPCIHMI GLNRCGKSCR LRCTDYLRPD IKRGKFSQDE EQTILNLHSI LGNKWSAIAT 60 HLPGRTDNEI KNFWNTHLKK KLIHMGFDPM THQPRSDIFS TLPQLIALAT LIENPSLWEE 120 QAMRLQAEQA VHMARLNNCL QNLLQQPPPS FLPPPPPTFQ SNNNTIADMA DFNLLSHYEA 180 AAAAAVPAGV LQEPMGFSHL PDLEVYDFGG LISHGENSAG SSSSEWLRQN LPPPAADPVV 240 AESDSFTNVV DGCSASSYEG GGQMWSELLD DPIFHDIA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 8 | 82 | 36 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.L00136.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853295.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9SBF3 | 1e-56 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A022QBW3 | 0.0 | A0A022QBW3_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10280.1 | 4e-58 | myb domain protein 92 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.L00136.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|