PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00088.1.p

Common Name

LOC105973106, MIMGU_mgv1a008867mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bZIP

Protein Properties

Length: 361aa MW: 40695.3 Da PI: 6.7269

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00088.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.3	2.8e-12	74	106	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k++rr+++NReAAr+sR+RKka++++Le+ Migut.L00088.1.p 74 PADKVTRRLAQNREAARKSRLRKKAYVQQLENS 106 689****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-8	73	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.726	75	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	75	105	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-7	77	114	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-9	79	119	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-27	162	237	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MNSTSTQFVP SRRMGIYDPI HQISMWGDFK GNNILDESPS LILEVEAKLD NLSEDTSHGT 60 VGPSNKYDQE ANKPADKVTR RLAQNREAAR KSRLRKKAYV QQLENSKLRL IQLEQELDRV 120 RKQGLYVGGS LDNQIGNVGS INPAIAAFEI EYGHWVEEQN RQISELRNSL NSDIGELDLR 180 VLVDNGMRHY FDLFAMKAAA AKIDVFYIMS GMWKTSAERF FFWIGGFRPS ELVKVLLPHL 240 EPLLEQQRVD ICNLAQSCQQ MEDALSQGME KLHQILAGSI AVDLLREGNC LPQIGAAVDK 300 LEALVRFVGQ ADHLRQETLQ QISRILNTRQ AAYGLLALGE YLQRLRTLSS VWSSHARESA 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MNSTSTQFVP SRRMGIYDPI HQISMWGDFK GNNILDESPS LILEVEAKLD NLSEDTSHGT  60
VGPSNKYDQE ANKPADKVTR RLAQNREAAR KSRLRKKAYV QQLENSKLRL IQLEQELDRV  120
RKQGLYVGGS LDNQIGNVGS INPAIAAFEI EYGHWVEEQN RQISELRNSL NSDIGELDLR  180
VLVDNGMRHY FDLFAMKAAA AKIDVFYIMS GMWKTSAERF FFWIGGFRPS ELVKVLLPHL  240
EPLLEQQRVD ICNLAQSCQQ MEDALSQGME KLHQILAGSI AVDLLREGNC LPQIGAAVDK  300
LEALVRFVGQ ADHLRQETLQ QISRILNTRQ AAYGLLALGE YLQRLRTLSS VWSSHARESA  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00088.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853574.1	0.0	PREDICTED: transcription factor TGA1-like
Swissprot	Q39237	1e-171	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A022Q9V7	0.0	A0A022Q9V7_ERYGU; Uncharacterized protein
STRING	Migut.L00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-155	bZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.L00088.1.p
Entrez Gene	105973106

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]