PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00031.1.p | ||||||||
Common Name | LOC105973118, MIMGU_mgv1a023608mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SRS | ||||||||
Protein Properties | Length: 376aa MW: 39961.7 Da PI: 8.1275 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.5 | 1.2e-66 | 127 | 287 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel............kskkq 83 g++sCqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpaakrrerq+qla++++++++s+ +++ kr+r+ +++++ Migut.L00031.1.p 127 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFQCATHVKSTWVPAAKRRERQNQLASLQQQQNQST-TSTGKRHRSRtddvnhnliinnNNSAS 218 5789****************************************************998887766.333333333334667778765444555 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvs.svddgeeelaYqtavsigGhvfkGiLydqGle 153 ++l +t++++++ + le+ ++P+evsseavfrcvrvs +v+d+ee+ aYqtav+i GhvfkGiLydqG+e Migut.L00031.1.p 219 NSLVCTRIPTTT--SGLEVGKFPTEVSSEAVFRCVRVSaAVEDAEEQWAYQTAVNICGHVFKGILYDQGTE 287 566677777665..5588999****************84599***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-62 | 129 | 287 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.8E-27 | 131 | 173 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.1E-25 | 237 | 285 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MAGFFSLGGG GGRGTTTGGS SRNPNQESSN PPSEINPESW FLYRNEEISY KGFELWQPQP 60 QHHHQQAENF LHRGVGVNPL QDLYASAGGL AVGPSRGGGF NMSSVDEQSP RSGFLMMRSG 120 GGGGGGGGGI SCQDCGNQAK KDCTHMRCRT CCKSRGFQCA THVKSTWVPA AKRRERQNQL 180 ASLQQQQNQS TTSTGKRHRS RTDDVNHNLI INNNNSASNS LVCTRIPTTT SGLEVGKFPT 240 EVSSEAVFRC VRVSAAVEDA EEQWAYQTAV NICGHVFKGI LYDQGTEGQY MPAETSSGGG 300 GSVSAGATHH HQQQQQQQQQ LNLITGNSSN TAAANTSSGG AGATAFMDTS HHLYTGSINS 360 FLSGTQFFPP PPPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00031.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853590.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_012853591.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | K4B6C9 | 2e-93 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A022Q800 | 0.0 | A0A022Q800_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L00031.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 7e-61 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00031.1.p |
Entrez Gene | 105973118 |
Publications ? help Back to Top | |||
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