PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01409.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27406.9 Da PI: 7.5267 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.6 | 6.5e-29 | 56 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+P+d el+ e+L++k+ + ++e+i++++ i++++P++Lp +k++ ++ +fF + ++ya+g+rk+r Migut.K01409.2.p 56 LPAGVKFDPSDVELL-EHLAAKCGVGFegphMFIDEFIPTLEgdegICYTHPENLP-GAKKDGTSFHFFYRIVNAYASGQRKRRRiedqerti 146 799************.999999765544555444445655433345**********.556778999*****************9768888877 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++ +W++tgk+k+v++ +g ++g kk++v+y g + +k+ k++Wvmh+y+l Migut.K01409.2.p 147 kAAHVRWHKTGKTKSVKE-NGVQKGFKKIMVLYAGskTGSKPGKCNWVMHQYHL 199 766899***********9.999***********7622445666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-34 | 41 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.337 | 56 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-13 | 57 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDSRAWIIDS RGLAKKVKNA GISTANQIND CGANWQCPNC QYLIDNSDTS HEWPGLPAGV 60 KFDPSDVELL EHLAAKCGVG FEGPHMFIDE FIPTLEGDEG ICYTHPENLP GAKKDGTSFH 120 FFYRIVNAYA SGQRKRRRIE DQERTIKAAH VRWHKTGKTK SVKENGVQKG FKKIMVLYAG 180 SKTGSKPGKC NWVMHQYHLG SDEDEREGEY VVSKIFYQPQ IERDQKNEAS LKIEEECKNN 240 II* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 137 | RKRRR |
2 | 134 | 138 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01409.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840545.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 9e-81 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A022R445 | 1e-157 | A0A022R445_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K01409.1.p | 1e-180 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 1e-89 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01409.2.p |