PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K01307.1.p
Common NameLOC105960949, MIMGU_mgv1a009252mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 349aa    MW: 38749 Da    PI: 6.1915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K01307.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l+ +++q G g+W++ +   g+ R++k+c++rw +yl
  Migut.K01307.1.p 20 KGPWTSEEDDKLLSYIQQNGHGSWRALPLNAGLQRCGKSCRLRWTNYL 67
                      79********************************************97 PP
2Myb_DNA-binding52.41.2e-1673118148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T +E+  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Migut.K01307.1.p  73 RGKFTSQEEHTIIQLHALLGNR-WSAIATHLQ-KRTDNEIKNYWNTHL 118
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-231170IPR009057Homeodomain-like
PROSITE profilePS5129415.1551567IPR017930Myb domain
SuperFamilySSF466891.25E-2817114IPR009057Homeodomain-like
SMARTSM007172.7E-111969IPR001005SANT/Myb domain
PfamPF002493.8E-142067IPR001005SANT/Myb domain
CDDcd001677.88E-92267No hitNo description
PROSITE profilePS5129425.61168122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2571122IPR009057Homeodomain-like
SMARTSM007171.6E-1472120IPR001005SANT/Myb domain
PfamPF002497.6E-1673118IPR001005SANT/Myb domain
CDDcd001677.53E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVSKKTMGRT PCCEKIGLKK GPWTSEEDDK LLSYIQQNGH GSWRALPLNA GLQRCGKSCR  60
LRWTNYLRPD IKRGKFTSQE EHTIIQLHAL LGNRWSAIAT HLQKRTDNEI KNYWNTHLKK  120
RLANMGIDPV THKPKNGTLL SGHSKNSANL SHMAQWENAR LEAEARLVKQ SKLRSPALDS  180
FQAQDSEFPS GPSPVHKPVG PSPYPDVLKG WIGGAWEKTS SSFLEHVGEG ILTDELEREK  240
DSGNYLAALR DEGIDNPVQF TPELHEPPLF STEWASESML GHTSEHVPSD NFAETFTDLL  300
LNNSCDEGDG GESDNSNGSD GDSCEGNRNY WDSILNLVNS SPSDSPIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24181225108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K01307.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2041970.0HQ204197.1 Mimulus guttatus pop-variant IM767 MYB transcription factor MIXTA-like 7 protein (MYBML7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840622.10.0PREDICTED: protein ODORANT1 isoform X1
SwissprotQ9LXF11e-105MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A022R4U70.0A0A022R4U7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-100myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Scoville AG,Barnett LL,Bodbyl-Roels S,Kelly JK,Hileman LC
    Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus.
    New Phytol., 2011. 191(1): p. 251-63
    [PMID:21352232]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]