PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01260.1.p | ||||||||
Common Name | LOC105973556, MIMGU_mgv1a011333mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 30291.2 Da PI: 6.8609 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.1 | 2e-38 | 37 | 96 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Migut.K01260.1.p 37 NQVLKCPRCESINTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 96 6889****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-33 | 38 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.348 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQDIHAFGGG AATGGGGGES FFGGGDRRLR PHSHPNNQVL KCPRCESINT KFCYYNNYNL 60 SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KAKRSKQKSS AAAYPVDAPG DRSPNAQSSS 120 SESSSLTAAA AATPTSTAKA AAEEGSPPNN KTTKPTPPDN YPDSMFFNGN PNFDHQSAPE 180 GQIFAADVGS FTSLMESSST EMLGFGMADV TTTPYERVHQ ENQTPAPNNS GLEMTATGVG 240 MNNDGLAAAL DWGGGDQGMF NLTAAVDPAY WSQSHWNDQS LNYLL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01260.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009769 | 4e-48 | AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854046.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A022Q6Q4 | 0.0 | A0A022Q6Q4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K01260.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-33 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01260.1.p |
Entrez Gene | 105973556 |