PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01158.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 806aa MW: 89790.8 Da PI: 6.3324 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Migut.K01158.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215 99*****************************7444..44459************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Migut.K01158.1.p 216 NEKNQLLLGIRRA 228 899999****997 PP | |||||||
2 | Auxin_resp | 118.8 | 4.4e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wrs+k Migut.K01158.1.p 253 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWTNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-21 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-9 | 666 | 768 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.54E-7 | 674 | 754 | No hit | No description |
PROSITE profile | PS51745 | 23.036 | 678 | 764 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 806 aa Download sequence Send to blast |
MKLSTSGMGQ HSHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE 60 IDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDA YLPVELGMGS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYAKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIG DLDPVRWTNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG ASSFQDGSNE TMNGMAWLRG DEGGGFNPMN FQSAGTFPWM 420 QQRFDPSALR NDPNQYQAML SAGLQNDHRD LLKNQLLQFQ QQQQPMHYLQ HSPVPSNILP 480 LQTQMLSDNM QRTLIVPPPH QVENNPSEQQ QHTYQEAFLP SDIPSPSFTK SDFANSDSNK 540 FSSHSGMQNM LGSGSGNLVN FSITGHHQHQ QHPIVNEQSA QQSWAAKFGQ SPVRGGTGKD 600 AASMQEQDQA ALFGANMDSS GLLLPTTVSS MGADMMFSMP LGSSVGYQTT PLYGYVQDSS 660 DNNMLHAAAQ VDQQTPNPTF VKVYKTGSVG RSLDIGRFNS YEELRNELGE MFGIQGLLED 720 HHRQRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVMKLGK EEAESLNISS 780 TDQRINNADA QTLIPGLPSL GSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01158.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851442.1 | 0.0 | PREDICTED: auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A022QCK6 | 0.0 | A0A022QCK6_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01158.1.p |