PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.K01088.2.p | ||||||||
Common Name | MIMGU_mgv1a010009mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 326aa MW: 37811.1 Da PI: 7.3595 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+eq+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R+++k Migut.K01088.2.p 22 KKQYHRHTTEQIQQLEAFYNECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQMK 77 688999***********************************************998 PP | |||||||
2 | START | 32.6 | 1.8e-11 | 195 | 307 | 3 | 89 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +a++el+ + ++ep+W++ + + +d + +f++s+ + e +++sg v m ++ l e l+d++ +W+e ++ ka+t Migut.K01088.2.p 195 AVAAMNELLELLRVNEPLWFEAPsdhgrYTLRRDSYDMIFPKSNQvntssARFESSKDSGEVAMSATHLIEMLVDVN-KWKEIFPtivtKATT 286 7899*******************77776666677777777776669999999*************************.*************** PP EEEECTT.............E CS START 82 levissg.............g 89 le+i++g + Migut.K01088.2.p 287 LEAIDTGifggllhlgrtskN 307 *******99755444444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 8 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-19 | 12 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-18 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.24E-16 | 22 | 77 | No hit | No description |
Pfam | PF00046 | 4.9E-18 | 22 | 77 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.5E-5 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-5 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 16.15 | 184 | 293 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.68E-6 | 186 | 318 | No hit | No description |
Pfam | PF01852 | 1.9E-6 | 195 | 307 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MDLSNRRNGS GDEENYNSRE GKKQYHRHTT EQIQQLEAFY NECPHPDKNQ RQQLSRELGL 60 DQKQIKFWFQ NKRTQMKALN ERADNNSLRS ENQRIHFENL SMHEVLKNAF CPSCNNSGVC 120 EEEKRQNLQR LRIENARRKE EYERAVNFFT NYTGNPALPF AGTEPSTSAP GQQYMSQHWS 180 TSLTHVDKSV IIETAVAAMN ELLELLRVNE PLWFEAPSDH GRYTLRRDSY DMIFPKSNQV 240 NTSSARFESS KDSGEVAMSA THLIEMLVDV NKWKEIFPTI VTKATTLEAI DTGIFGGLLH 300 LGRTSKNSYY YYYHYIFGIS ERIKN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.K01088.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832510.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A022RNN7 | 0.0 | A0A022RNN7_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-72 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.K01088.2.p |