PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00965.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 189aa MW: 21387.5 Da PI: 8.1988 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.8 | 3.3e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien+s + v fskRrng++KKA ELSvLC+++va i fs++gklyey+s Migut.K00965.1.p 9 KQIENNSAQMVCFSKRRNGLIKKARELSVLCNVDVAAIFFSKRGKLYEYCS 59 78***********************************************96 PP | |||||||
2 | K-box | 33.3 | 2.1e-12 | 112 | 164 | 43 | 95 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++++s+ +L L++++e++l +Rs+K++++++ + lq+ke++l+ee+k + Migut.K00965.1.p 112 VDKISVADLGLLQKHVETALMDVRSTKTKIMTDAQSSLQEKENMLEEEKKHFN 164 56899*******************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.703 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-27 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.211 | 76 | 173 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.2E-8 | 112 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGRRKLEMKQ IENNSAQMVC FSKRRNGLIK KARELSVLCN VDVAAIFFSK RGKLYEYCSA 60 NSMAHVLQQY QSRVESEKDG CDTEDLYSRN GDYLTYSELL KTVGSELKEP HVDKISVADL 120 GLLQKHVETA LMDVRSTKTK IMTDAQSSLQ EKENMLEEEK KHFNEIVEGN KCAKKKKVVI 180 DLNITADG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00965.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP172242 | 1e-169 | KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842152.1 | 1e-137 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 | ||||
TrEMBL | A0A022R3T8 | 1e-108 | A0A022R3T8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 2e-39 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00965.1.p |