PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00951.3.p | ||||||||
Common Name | LOC105962382, MIMGU_mgv1a005903mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SBP | ||||||||
Protein Properties | Length: 464aa MW: 50789.2 Da PI: 7.9793 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.2 | 1.3e-39 | 183 | 260 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC+adls+ak+yhr+h+vC+ hsk+++v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Migut.K00951.3.p 183 RCAVDGCNADLSTAKDYHRKHRVCDGHSKCAKVIVGGLERRFCQQCSRFHNLSEFDERKRSCRRRLSDHNARRRKPQQ 260 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.2E-33 | 180 | 245 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.171 | 181 | 258 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-37 | 182 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.3E-30 | 184 | 257 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDWNAKWDWE NIVAFGSKAS ESPKKLQLVD WMIVDDGEID AGSFNPSMCG GGNNSGGAAS 60 GSDGGHVSST KSSISASTDS STKDVMQSSN FRLMNFEGFP ENFSNKIEMK ETEVSGTYPV 120 LEASVGSVEP LIGLKLGKRT YFENSGAGGN VKSVSSSSSV VPNTSTSLLK KTKSPGQNLP 180 APRCAVDGCN ADLSTAKDYH RKHRVCDGHS KCAKVIVGGL ERRFCQQCSR FHNLSEFDER 240 KRSCRRRLSD HNARRRKPQQ ETIQFNSTRL SSSFYGGRQQ TGFLLNNGPL IQSGNAANTT 300 WGNTCNSKFT LTKGYPFISN GNGVSEEQMH MPGIKLPHAT NMHGSKGSHI SSHLDAAMEY 360 RRALSLLSTN SWSSCGQESM PLHNHNNNNN NNNPMMHENE TFVTQPMMHT IPEGIPLSAG 420 SEFWLSTAGH QSTHHHRTNS NNYDEIQLSV TPYEPDFYSN ILN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-29 | 184 | 257 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 256 | RKRSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00951.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842135.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_012842137.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_012842138.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A022R3T1 | 0.0 | A0A022R3T1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K00951.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-59 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00951.3.p |
Entrez Gene | 105962382 |