PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00941.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 16912.9 Da PI: 4.4938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.3e-15 | 37 | 84 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 GVr + g+++AeIrd s++ + r++lgkf t+eeAa a+++a+ k+ g Migut.K00941.1.p 37 GVRKMP-CGKYAAEIRD-STR--CrIRVWLGKFNTEEEAALAYDQAAFKMLG 84 9*****.7*********.233..45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.649 | 34 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 35 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-10 | 37 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 37 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-22 | 37 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-22 | 37 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEYSSGSNST AKNEEIKSSL SSADFSGEEA SRRTLIGVRK MPCGKYAAEI RDSTRCRIRV 60 WLGKFNTEEE AALAYDQAAF KMLGPSIPLN FPLEKVIESL EKMNCSGEEG SSPAKALNES 120 NKTINLSTKQ RTINTSEEED IVVFEDLGFD LLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 37 | 94 | 17 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00941.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838543.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-32 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A022S3A2 | 2e-96 | A0A022S3A2_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-33 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00941.1.p |
Publications ? help Back to Top | |||
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