PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00827.1.p | ||||||||
Common Name | MIMGU_mgv1a012920mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 27009.8 Da PI: 7.0693 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.6 | 3.8e-37 | 13 | 110 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk lrrkC++dC++apyfp ++p+kf nvhk+FGasnv+k+l++l++ red+++slv+eAe+r++d vyG+v++i lq+ +++l +e Migut.K00827.1.p 13 PCAACKCLRRKCVNDCIFAPYFPPNDPQKFTNVHKVFGASNVSKILHELHPRLREDTVKSLVFEAECRLQDQVYGCVKHIYFLQETMKKLLNE 105 7******************************************************************************************99 PP DUF260 94 lallk 98 ++++k Migut.K00827.1.p 106 IQSRK 110 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.471 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-37 | 13 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLRRREALAS NTPCAACKCL RRKCVNDCIF APYFPPNDPQ KFTNVHKVFG ASNVSKILHE 60 LHPRLREDTV KSLVFEAECR LQDQVYGCVK HIYFLQETMK KLLNEIQSRK MDLTRYMGPQ 120 AMLVGTPHDP HRIEMQQIVA HEQQQQQQQQ LMLHHQLQQQ LLLNDAVSFN DVFDGPGNEN 180 SVTASGFNQM PAAAVDVVQP HTVGLDCSYG DHLQTQTPLQ QEQRQTFCDS DKQPII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-41 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-41 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00827.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835020.1 | 1e-177 | PREDICTED: LOB domain-containing protein 1-like | ||||
TrEMBL | A0A022RHD4 | 1e-176 | A0A022RHD4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K00827.1.p | 1e-176 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-47 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00827.1.p |