PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00805.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 216aa    MW: 23920.7 Da    PI: 7.1245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00805.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-1696147155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f  +eeAa+a++ a+ k++g
  Migut.K00805.1.p  96 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFAMEEEAAEAYDIAAIKFRG 147
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.73175IPR001471AP2/ERF domain
SMARTSM003809.1E-52581IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-92776IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-84675IPR001471AP2/ERF domain
PfamPF008471.9E-1096147IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1596154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-1697153IPR001471AP2/ERF domain
SMARTSM003801.3E-2497161IPR001471AP2/ERF domain
PROSITE profilePS5103217.04297157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRFVHLIDQI SGYWQFSSGD AATDVVVRRW LKLYESSICN RFFCPGGYDK EDKAARAYDL  60
AALKYWGATA TTNFPILNYA KELEEMNSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  120
KDLYLGTFAM EEEAAEAYDI AAIKFRGLNA RLKLSLESND MDDNLNHPSN TAAATQTTTN  180
ISFSTTVQPP GSSLYPYGVP FDTTAAAGAL FYHHC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00805.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844257.14e-83PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6PQQ32e-57AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A022QWJ52e-81A0A022QWJ5_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.18e-52AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]