PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00626.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 158aa MW: 18128.4 Da PI: 8.1227

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00626.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.4	3.5e-36	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp + r +a++sl+ eA r++ PvyG+vg i+ l+qq+++++ + Migut.K00626.1.p 5 RCAACKHLRRRCPSDCIFSPYFPSNDPRRFAYVHKIYGASNVGKILHDLPVNLRAEAAESLFKEASYRIKYPVYGCVGQITMLHQQIQNAECQ 97 6******************************************************************************************** PP DUF260 94 lallkee 100 la+++++ Migut.K00626.1.p 98 LARIRAR 104 *998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.593	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-36	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MNSSRCAACK HLRRRCPSDC IFSPYFPSND PRRFAYVHKI YGASNVGKIL HDLPVNLRAE 60 AAESLFKEAS YRIKYPVYGC VGQITMLHQQ IQNAECQLAR IRARIAVIQA RIINNINNEE 120 EEHQQADYNN INPNFFPSQN DVSNPTSFNY DLLTWFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-31	3	98	9	104	LOB family transfactor Ramosa2.1
5ly0_B	7e-31	3	98	9	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00626.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848658.1	1e-72	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	3e-45	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A022QPJ3	7e-73	A0A022QPJ3_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.K00626.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-42	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Migut.K00626.1.p