PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00589.1.p | ||||||||
Common Name | MIMGU_mgv1a019786mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 22397 Da PI: 7.9776 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 134 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ ++d+ ++lG+g+W+ I+r+ +Rt+ q+ s+ qky Migut.K00589.1.p 134 PWTEDEHRTFLDGLEKLGKGDWRGISREYVSTRTPTQIASHAQKY 178 8*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 1.2E-4 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.845 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.322 | 127 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.53E-17 | 129 | 183 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 131 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-11 | 131 | 181 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-18 | 131 | 182 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-12 | 134 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-10 | 134 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGRKCSECGK VGHNSRTCTT SASRSGLVAD DRDDDVIING GGGGIRLFGV RIDDDVIISS 60 SALSSSLIIT PMKKSLRFDS LPIMILTPPA APSSSSSSSI YDNSDNNNNT FTAGGYLSDD 120 PLIHQPPERR KGVPWTEDEH RTFLDGLEKL GKGDWRGISR EYVSTRTPTQ IASHAQKYFL 180 RQTTKKTKHR SSLFDMVGAD NDQCL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00589.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845524.1 | 1e-150 | PREDICTED: transcription factor MYB1R1 | ||||
TrEMBL | A0A022QTK8 | 1e-143 | A0A022QTK8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00589.1.p |