PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00566.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27828 Da PI: 7.462 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+++v+ +G+g +W + +++ g++R++k+c++rw++yl Migut.K00566.1.p 14 RGPWSPQEDNTLKNYVENHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ + + G++ W+ Ia+ ++ gRt++++k++w++ Migut.K00566.1.p 69 GGFTEEEDHIILTLYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.33 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.32E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.282 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-8 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRAPCCDKT KVKRGPWSPQ EDNTLKNYVE NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDHIIL TLYHNIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLLLA 120 AAATSTTTSA ATTATTSSSN NSFTSVTTNN YNNLWQPSSS SIYSTNDIIN YELINNMLPY 180 FPSNDQELMN PLPGLTEIPE NETEVENNAY NCGLFHPCAA PPFSGQLTTS FSLDNNIIIN 240 NNNNININGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00566.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845415.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A022QTN0 | 1e-149 | A0A022QTN0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 5e-66 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00566.1.p |