PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00558.1.p
Common NameMIMGU_mgv1a025425mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 480aa    MW: 52959.6 Da    PI: 6.9633
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00558.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.4e-36471911128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                       lp+G++F+Ptd+el+ e+L++kvegk+ + ++         +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  Migut.K00558.1.p  47 LPAGVKFDPTDQELI-EHLEAKVEGKESKSKShplidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 137
                       799************.99*********444334555555544776646**********.555666799******************7333455 PP

               NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Migut.K00558.1.p 138 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                       5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3843210IPR003441NAC domain
PROSITE profilePS5100532.41647210IPR003441NAC domain
PfamPF023652.2E-1648191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNKSNQLGSV SSSDLIDAKL EEHQLCGSKH CPGCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
IEHLEAKVEG KESKSKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEREG ELVVSKIFYQ TQPRQCNWSS SDRGAAAASA AGEGNSTDRP  240
RDTGGGSNSK EIVIAQRDDF SAAAAAVNIG GGPAAIQGFG GIDIRQLKAD QFSFLPFRKS  300
FDEAGGNIGE ASIAREVVGG GGTCEEREMG QHHVTSEHEM GQHHVTHDPR QHHQHQHHHH  360
QIAAAAAYHI SRPSHSISAI IAPPLHHHTS SINILDQDHS FNVGPTIMLP NENFQQQHQQ  420
QQHHKLGGRS ASGLEELIMG CTSNNDIKEE SSMAGNPQEA EWLKYSNFWP DPDNPDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00558.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845550.10.0PREDICTED: uncharacterized protein LOC105965538
RefseqXP_012845552.10.0PREDICTED: uncharacterized protein LOC105965538
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A022QTN70.0A0A022QTN7_ERYGU; Uncharacterized protein
STRINGMigut.K00558.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-142NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]