PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00522.1.p
Common NameLOC105965431, MIMGU_mgv1a011460mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 282aa    MW: 30798.6 Da    PI: 4.9427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1774124155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Migut.K00522.1.p  74 TVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKG 124
                       57*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1274124IPR001471AP2/ERF domain
PROSITE profilePS5103222.73475133IPR001471AP2/ERF domain
SMARTSM003806.1E-3575139IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1975133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3075134IPR001471AP2/ERF domain
PRINTSPR003671.8E-107687IPR001471AP2/ERF domain
CDDcd000182.10E-3076134No hitNo description
PRINTSPR003671.8E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAEQPTPPET ECSGGAFSSL SSQSSGSDQT DSPVPKPNTN TQAKRSRESG SGSDSEKTVG  60
NKRNRSDDDG GKHTVYRGVR MRAWGKWVSE IREPRKKSRI WLGTFATAEM AARAHDVAAI  120
AIKGGSAAIL NFPEISHLLP RPATCSPRDV QAAATKAAHM DHLDHHRRLD SPSPSAVSTT  180
TTTTTTSSTS EEYVSREPGD ELGEIVQLPS LDASYESTRC GDDLLLLGQD YSWDYYYNHS  240
SASSYSLEEE CGFFFQDNLV VDEDNTMSPN FEALLWKNQY C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1770133972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00522.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845425.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD35e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A022QW250.0A0A022QW25_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]