PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00443.1.p | ||||||||
Common Name | LOC105960644, MIMGU_mgv1a014582mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 21055 Da PI: 9.321 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.3 | 2.8e-64 | 2 | 157 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +eq+Cy+ CnfC+ +lavsvP +slf vvtvrCGhCt+l svn+a + + +hl + + + +++ + +v s+s+ ++++ Migut.K00443.1.p 2 AEQLCYIPCNFCSIVLAVSVPCNSLFDVVTVRCGHCTNLWSVNMASTFHPFWPDHHLLH--------QAPNYNSSSEYKVDLGGSSSKLNNKM 86 69***************************************999988887776666433........33333333333344444444444555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ + ++p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Migut.K00443.1.p 87 SIQPSIPTKLPEQRTVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157 566777888999999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.7E-70 | 2 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.03E-7 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 104 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAEQLCYIPC NFCSIVLAVS VPCNSLFDVV TVRCGHCTNL WSVNMASTFH PFWPDHHLLH 60 QAPNYNSSSE YKVDLGGSSS KLNNKMSIQP SIPTKLPEQR TVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE TTNQTAKLNE GSEKHKMRRA 180 AIVNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00443.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY451397 | 2e-40 | AY451397.1 Antirrhinum majus YABBY-like transcription factor PROLONGATA (PROL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840285.1 | 1e-138 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-75 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A022R5T5 | 1e-137 | A0A022R5T5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K00443.1.p | 1e-138 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-77 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00443.1.p |
Entrez Gene | 105960644 |
Publications ? help Back to Top | |||
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