PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00298.1.p | ||||||||
Common Name | MIMGU_mgv1a017819mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 325aa MW: 36857.9 Da PI: 6.6074 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2.1e-12 | 42 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Migut.K00298.1.p 42 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEEAAAHAYDLAALKYWG 98 57*******************99999998988888********************98 PP | |||||||
2 | AP2 | 50.8 | 4.2e-16 | 128 | 179 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Migut.K00298.1.p 128 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 179 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-15 | 42 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-8 | 42 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-13 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.848 | 43 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-18 | 43 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.64E-24 | 128 | 189 | No hit | No description |
Pfam | PF00847 | 1.3E-11 | 128 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 128 | 189 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-18 | 129 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-25 | 129 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.255 | 129 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAKLSQQSPI NNNVVSADVP VGMKRKRTRK TIPRDTPPQR SSIYRGVTRH RWTGRYEAHL 60 WDKNCWNETQ NKKGRQGAYD DEEAAAHAYD LAALKYWGQD TILNFPLFTE MEAQSREEKN 120 SVFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAAVAY DMAAIEYRGL 180 NAVTNFDLSR YVKWLKPNKN NDETTLASSS NNNHDSGTGS AATLPPLRQP SDEATLPQPR 240 PTTATSALGL LLQSSKFKEL MEMNMAAEVI HVSDNEQQQC SFPEDVKTCF ESHDFSNYSD 300 EQGDDLFGDF NSFMQPMVQF DFDL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00298.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547685.1 | 1e-157 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-90 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A022R625 | 0.0 | A0A022R625_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 4e-88 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00298.1.p |
Publications ? help Back to Top | |||
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