PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K00262.1.p | ||||||||
Common Name | MIMGU_mgv1a020062mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | CO-like | ||||||||
Protein Properties | Length: 373aa MW: 41066.9 Da PI: 7.6685 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 2.8e-06 | 22 | 54 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ + lfC+ + ++C +C + H+ Migut.K00262.1.p 22 KPCDYCNSTAALLFCRAESAFMCMSCDAKLHSA 54 68******99******************99965 PP | |||||||
2 | zf-B_box | 24 | 8.1e-08 | 67 | 108 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ +++ ++ C+ + lC +C +H+ H+ Migut.K00262.1.p 67 VWMCDVCQQAPAAVTCKADAAALCVTCDRDIHSAnplarrHE 108 689*****************************6566766776 PP | |||||||
3 | CCT | 68.1 | 2.3e-23 | 299 | 342 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Migut.K00262.1.p 299 RKARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 342 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.257 | 19 | 69 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.65 | 19 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.87E-7 | 23 | 69 | No hit | No description |
SMART | SM00336 | 9.3E-15 | 65 | 112 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.968 | 65 | 112 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.3E-6 | 67 | 109 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.41E-9 | 68 | 110 | No hit | No description |
Pfam | PF06203 | 1.5E-17 | 299 | 341 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.559 | 299 | 341 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MTQLDGGGGK YFPAGWNVAA AKPCDYCNST AALLFCRAES AFMCMSCDAK LHSADDKPAA 60 ARRHERVWMC DVCQQAPAAV TCKADAAALC VTCDRDIHSA NPLARRHERA AVVPFYDTAE 120 SMVPMKSSTP SSTAAALSGG DSHRKLDNST ILNDYFPDSW ISSEPFVTTK LPADNPAMDF 180 FFSDSDQLLN FDNYQIFSSN PFNDSVVPVQ TTVKPPVQAQ LIHKQPPENR FEIDFTRSNI 240 TSYTNQKFQA TSSSTDVGIV PDVSSGGVSE TTSYPFATTS VKSENYDPIP IRSINHVDRK 300 ARVLRYKEKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK RTEYDSDADE IFSSGAGSNF 360 FADAGYGVVP SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K00262.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841066.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A022R0P7 | 0.0 | A0A022R0P7_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 6e-81 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K00262.1.p |