PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00256.1.p
Common NameLOC105961369, MIMGU_mgv1a024417mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 374aa    MW: 42232.6 Da    PI: 6.8961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+teEd +l+ ++  +G+g +W + ++++g++R++k+c++rw++yl
  Migut.K00256.1.p 14 KGPWSTEEDAKLKSYIDTYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding37.64.9e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Migut.K00256.1.p  69 GGFTDEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.937962IPR017930Myb domain
SuperFamilySSF466891.52E-2511109IPR009057Homeodomain-like
SMARTSM007173.0E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-241569IPR009057Homeodomain-like
CDDcd001676.67E-81662No hitNo description
PROSITE profilePS5129421.62763117IPR017930Myb domain
SMARTSM007176.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2370117IPR009057Homeodomain-like
CDDcd001679.47E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSTE EDAKLKSYID TYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FTDEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNNNNTI NNNRASNINN NSIHNQPKDN NHVANYDDHS LPNYLMSSSA IERLQLHMHL  180
QNDNDPFSSY NNRSLWPKLS PLQQRMINET LNSINHNQNN ILMQQQINSL IFPLNKETNI  240
GVSIQESGTV GPADGGIVHR GFCESDRVDD DLINNNNNNK STSGFFQTGN YYYNSNNNNN  300
SIQVAADHQF DCFKDEMDGL IKGENAVAWT WPGEFDVNST SSNSWEDSSS AATMIHHQSE  360
GIYDQDFGNM GYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00256.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841049.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL28e-97MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A022R5Z40.0A0A022R5Z4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-86myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]