PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00137.1.p
Common NameMIMGU_mgv1a009628mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family E2F/DP
Protein Properties Length: 348aa    MW: 37849.9 Da    PI: 7.3694
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00137.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-27108190271
           E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Migut.K00137.1.p 108 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfaepgngvttpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 190
                       689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.9E-1273346IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.3E-46103195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.1E-34107190IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-25109190IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-22110191IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.67E-41195298IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.54E-41197305No hitNo description
SMARTSM011386.2E-64197345IPR014889Transcription factor DP, C-terminal
PfamPF087817.9E-40198309IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVNHSNKSSS NMEDEDKNRS ALSRGGGGGG GGATRSWGTT VSGQSMSTSG SVGSPSGRSE  60
AAVAATASDS TFLRLDNLDI HADDAGSQGI ANNKKKKRGQ RATGGDKSGR GLRQFSMKVC  120
EKVESKGRTT YNEVADELVA EFAEPGNGVT TPDQQQYDEK NIRRRVYDAL NVLMAMDIIS  180
KDKKEIQWKG LPRTSVDDVD ELKSERVGLR NRIEKKAAYL NELEEQHVGL QNLVERNNQL  240
FGSGNAPSGG VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF  300
CEKPEISGAS QNGGESSRHA QRNNTQGRHP NSPPLPGILK ARFKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-38101195193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00137.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857324.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-162DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A022PZ700.0A0A022PZ70_ERYGU; Uncharacterized protein
STRINGMigut.K00137.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-148Transcription factor DP