PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00051.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 372aa    MW: 40205.1 Da    PI: 8.4969
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-4177152176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC+ dls +k y+ rhkvC +hsk++ v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Migut.K00051.1.p  77 RCQVEGCNIDLSGTKAYYCRHKVCGIHSKSSRVIVAGLHQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 152
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-3371139IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7175152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3976155IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3178151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEKGSSSSAS GGGGRAADHS HSHSLNGLNF GKKIYFQGGG GVGSGVLRPR SSGGGGRLPR  60
SPAKKGRSSV EGGQPPRCQV EGCNIDLSGT KAYYCRHKVC GIHSKSSRVI VAGLHQRFCQ  120
QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPPPGPFM SSSYTTTLSP PTFDNQSKTG  180
GLVMDFTRRE DSWPNNNNTI SALKYEQDDE DDDDDDLLED STNTRNNTTR HSYCGGAVIT  240
SPCPESSSTS KSALSLLSKQ SIPTWESTNQ TLLLQPSLDT TTTSAAAAAQ FSWGLKAANH  300
HHHHHHEAAA NNSITTTAAT TFHEMAPPHH MQAQYSRHEL GLSQLSEGQY HGLEGPTGYD  360
AASLQHMNWS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30781511184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722468e-78KP172246.1 Erythranthe guttata squamosa promoter binding protein 8.266 (SPL8.266) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857265.10.0PREDICTED: squamosa promoter-binding-like protein 17
RefseqXP_012857267.10.0PREDICTED: squamosa promoter-binding-like protein 17
RefseqXP_012857268.10.0PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLA0A022PWF20.0A0A022PWF2_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.K00051.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.13e-38squamosa promoter binding protein-like 15