PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01823.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 272aa    MW: 29053.3 Da    PI: 9.406
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01823.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP51.62.6e-1638674776
                      SSEEETTT--SS--S-STTTT-------S- CS
               SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76
                      srfh+l efD++krsCrrrLa+hnerrrk+
  Migut.J01823.2.p 38 SRFHQLPEFDQDKRSCRRRLAGHNERRRKP 67
                      9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.28167IPR004333Transcription factor, SBP-box
PfamPF031105.6E-93866IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.55E-133872IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.7E-53854IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLRLTILGTK FVASILSLLR SLLPVLSRGF ASSVAAYSRF HQLPEFDQDK RSCRRRLAGH  60
NERRRKPPPG TLFSPRYGSP CPSMFDNHSK SGGIVMDFTN YSSLAGSGNQ AAIGGKHQLP  120
SWQNNSLSGL VQGSTSGPRY SGVHSGVPTE HGCYGGASSG SSSALSLLSN QPWGSSRGRS  180
LSLGANNFLD PGAAIGQFPC SSSWGFKDGQ VGNNSTLHEM PPDLVLGQTS HTGNSHYTGE  240
LGLGQPNEVQ FHELDYSRGY DSSVQHMHWS L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01823.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834384.11e-172PREDICTED: squamosa promoter-binding-like protein 17
RefseqXP_012834385.11e-172PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLA0A022RLT21e-171A0A022RLT2_ERYGU; Uncharacterized protein
STRINGMigut.J01823.1.p1e-171(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-18squamosa promoter binding protein-like 9