PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01823.1.p
Common NameLOC105955225, MIMGU_mgv1a009499mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 341aa    MW: 36077.9 Da    PI: 9.3711
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.34.5e-4361136176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC+ dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Migut.J01823.1.p  61 RCQVEGCKLDLSDAKAYYSRHKVCGFHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQDKRSCRRRLAGHNERRRKP 136
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-3554123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.2459136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-4060141IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3262135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEKGSSSAAA AVGGAADDGL KFGKKIYFEG VGSGKQHGGG PKSPAKKVRS AAAQGGQTTP  60
RCQVEGCKLD LSDAKAYYSR HKVCGFHSKS PKVIVAGLEQ RFCQQCSRFH QLPEFDQDKR  120
SCRRRLAGHN ERRRKPPPGT LFSPRYGSPC PSMFDNHSKS GGIVMDFTNY SSLAGSGNQA  180
AIGGKHQLPS WQNNSLSGLV QGSTSGPRYS GVHSGVPTEH GCYGGASSGS SSALSLLSNQ  240
PWGSSRGRSL SLGANNFLDP GAAIGQFPCS SSWGFKDGQV GNNSTLHEMP PDLVLGQTSH  300
TGNSHYTGEL GLGQPNEVQF HELDYSRGYD SSVQHMHWSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30621351184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834384.10.0PREDICTED: squamosa promoter-binding-like protein 17
RefseqXP_012834385.10.0PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLA0A022RLT20.0A0A022RLT2_ERYGU; Uncharacterized protein
STRINGMigut.J01823.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-55squamosa promoter binding protein-like 9