PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01664.1.p | ||||||||
Common Name | LOC105949312, MIMGU_mgv1a012772mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27199.7 Da PI: 9.5761 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.5 | 1.6e-15 | 69 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr+llP+ + +s+Kls +++ ++v+YI + q Migut.J01664.1.p 69 KKLNHNASERDRRKKINNLYSSLRSLLPNeD---QSRKLSIPATVSRVVKYIPEIQ 121 6789*************************77...******************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-17 | 66 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.729 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.05E-12 | 69 | 125 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 69 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMALSHQFCS VGWLLDDPIS HDHHQANMIN YLSADRPQDT SEYSIDLHSP NSSRTNPKIN 60 GGDGNKTVKK LNHNASERDR RKKINNLYSS LRSLLPNEDQ SRKLSIPATV SRVVKYIPEI 120 QKEVERLTHK KEMLTSKITS PSAPSSFGLK KQNNINSSAV TATQIGEREI VFQISKADYQ 180 KRALQISEAV TTFEEQGFLL TNATSFESFD GRIFFNLHIQ AQGSHQVMNA EILKEKLWPF 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01664.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828055.1 | 1e-180 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A022PS88 | 1e-179 | A0A022PS88_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J01664.1.p | 1e-179 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01664.1.p |
Entrez Gene | 105949312 |