PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01656.1.p
Common NameLOC105949450, MIMGU_mgv1a008778mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family E2F/DP
Protein Properties Length: 363aa    MW: 39062.4 Da    PI: 8.2253
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01656.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.81.6e-27110192271
           E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Migut.J01656.1.p 110 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVTEfadpnnnlaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 192
                       789********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.7E-1266362IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.3E-47105197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-35109192IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25111192IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.35E-22112193IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.12E-42197300IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-41198305No hitNo description
SMARTSM011384.2E-64199360IPR014889Transcription factor DP, C-terminal
PfamPF087819.0E-40200307IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVNDDNYSNQ EEGKGNKNPS TISRGGGGGG GGGGGGATRS WGTTVSGQSM STSGSVGSPS  60
SRSEAPVATP ASDSTFIRLN NLDIQGDDAG SLGPAGKKKR GQRAVGGDKN GRGLRQFSMK  120
VCEKVESKGR TTYNEVADEL VTEFADPNNN LASPDQQQYD EKNIRRRVYD ALNVLMAMDI  180
ISKDKKEIQW KGLPHTSLND VEELKTERIG LRSRIEKKAA YLDELEEQYI GLQTLVQRNK  240
QLYGSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM  300
KFCERTHVGG GAGRNIPADS GGASSSMATL YHPHRSRSNI SGRPPPSPPL PGIIKARVKH  360
EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-41103197193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01656.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828217.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-159DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A022PSX30.0A0A022PSX3_ERYGU; Uncharacterized protein
STRINGMigut.J01656.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-146Transcription factor DP