PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01603.1.p | ||||||||
Common Name | MIMGU_mgv1a025797mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WOX | ||||||||
Protein Properties | Length: 210aa MW: 23110.4 Da PI: 6.4181 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3.1e-17 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+e+Le+lF+ + +p ++e ++ k l + +++V++WFqNrR + ++ Migut.J01603.1.p 22 RSRWTPKPEQIEILESLFNGgTVNPHRDETVRIRKMLqkfgPVGDANVFYWFQNRRSRSRR 82 89*****************99****************99999****************997 PP | |||||||
2 | Wus_type_Homeobox | 104.5 | 6.9e-34 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+peQi+iLe+l++ G+++P ++e+ ri+++L+++G ++d+NVfyWFQNr++R+r++q Migut.J01603.1.p 21 ARSRWTPKPEQIEILESLFNGGTVNPHRDETVRIRKMLQKFGPVGDANVFYWFQNRRSRSRRRQ 84 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-10 | 18 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.677 | 18 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-14 | 18 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.9E-7 | 20 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-15 | 22 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEDQEQDIGS GRSHGSEAEP ARSRWTPKPE QIEILESLFN GGTVNPHRDE TVRIRKMLQK 60 FGPVGDANVF YWFQNRRSRS RRRQRQLQAT LTAAAADQQP QAGGGGVGHH QYHENTISST 120 TTSGFSGSSS SFGLGGTDYL GPNDTSNLHY QSEGLITVFI NGVATEVTKG PLNVKAMFGG 180 DYLLFHCSGM PVDEVYDHGF LVQHGESYFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01603.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839514.1 | 1e-156 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
Swissprot | Q8GY25 | 8e-47 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A022R5X1 | 1e-155 | A0A022R5X1_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 8e-31 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01603.1.p |
Publications ? help Back to Top | |||
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