PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01602.1.p | ||||||||
Common Name | LOC105959899, MIMGU_mgv1a011829mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 30075.4 Da PI: 10.1582 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 48 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+ +v+q+G+ +W++Ia+++ gR++k+c++rw++ Migut.J01602.1.p 48 RGHWRPNEDAKLKTLVAQFGPQNWNLIAEKLH-GRSGKSCRLRWFNQ 93 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 101 | 143 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++++k++w+ Migut.J01602.1.p 101 RAFSEEEEERLLSAHKMYGNK-WAMIARLFP-GRTDNSVKNHWHV 143 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.32 | 43 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-12 | 47 | 96 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-28 | 48 | 141 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-15 | 48 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 49 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.80E-11 | 51 | 92 | No hit | No description |
PROSITE profile | PS51294 | 27.151 | 95 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 101 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 102 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-7 | 111 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MNLQQQNPPT RAAPPQLRFR FAAHEGDTTT ATAAGGGGGG QTTKLCARGH WRPNEDAKLK 60 TLVAQFGPQN WNLIAEKLHG RSGKSCRLRW FNQLDPRINK RAFSEEEEER LLSAHKMYGN 120 KWAMIARLFP GRTDNSVKNH WHVIMARKHR ETNSFYRRRK PTFSANVQNS NFTSETKTNN 180 NVNLDESGGS TCTDLSLTPS SFRPETETPH FLISRFSPVH QIGENVESNS EGSAASESVA 240 NNNRANVYIC GENEKSRIAF IDFLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-32 | 45 | 148 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-32 | 45 | 148 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01602.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839515.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q5NBM8 | 2e-72 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A022R4X5 | 0.0 | A0A022R4X5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 9e-70 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01602.1.p |
Entrez Gene | 105959899 |