PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01511.1.p | ||||||||
Common Name | LOC105958130, MIMGU_mgv1a014848mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LSD | ||||||||
Protein Properties | Length: 177aa MW: 18315.5 Da PI: 8.4399 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.2 | 1.1e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+Ca+C +V Migut.J01511.1.p 7 CSGCRSLLMYPSGATNVCCAVCSAV 31 **********************998 PP | |||||||
2 | zf-LSD1 | 47.8 | 2.4e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA sVRC++C+tV Migut.J01511.1.p 46 CGGCRTLLMYTRGAASVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 50.9 | 2.5e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Migut.J01511.1.p 84 CGNCQTTLMYPYGAPSVKCAICQFI 108 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.7E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.0E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.9E-12 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQSQVVCSGC RSLLMYPSGA TNVCCAVCSA VTAIPPPGME MAQLICGGCR TLLMYTRGAA 60 SVRCSCCHTV NLAPAPNNIA HINCGNCQTT LMYPYGAPSV KCAICQFITN VNMGNARVPI 120 PMHRTIGPPS SASMPSSSAA MPNLQSQTVV VENPMSVDKS GKLVSNVVVG VTTDKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01511.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837586.1 | 1e-124 | PREDICTED: protein LSD1-like isoform X1 | ||||
Swissprot | Q6ASS2 | 2e-73 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A022RAM2 | 1e-123 | A0A022RAM2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-70 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01511.1.p |
Entrez Gene | 105958130 |
Publications ? help Back to Top | |||
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