PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01396.1.p
Common NameMIMGU_mgv1a020998mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 344aa    MW: 38975.2 Da    PI: 7.23
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-1246102155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Migut.J01396.1.p  46 SVHRGVTRHRWTGRYEAHLWDkNCWNEaQNKKGRQGAYDDEEAAAHAYDLAALKYWG 102
                       689******************99999999988888********************98 PP
2AP250.74.6e-16145196155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Migut.J01396.1.p 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 196
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1546112IPR016177DNA-binding domain
PROSITE profilePS5103218.34747110IPR001471AP2/ERF domain
SMARTSM003806.6E-1947116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1247111IPR001471AP2/ERF domain
PfamPF008476.3E-847102IPR001471AP2/ERF domain
PRINTSPR003675.5E-54859IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18145206IPR016177DNA-binding domain
CDDcd000186.15E-23145206No hitNo description
PfamPF008471.4E-11145196IPR001471AP2/ERF domain
SMARTSM003802.0E-24146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.057146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17146205IPR001471AP2/ERF domain
PRINTSPR003675.5E-5186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAKLSQKKNT TTLIATVSAN PVTNPGIKAK RTRKTIPRDS PPQRSSVHRG VTRHRWTGRY  60
EAHLWDKNCW NEAQNKKGRQ GAYDDEEAAA HAYDLAALKY WGPDTILNFP LSTYQKELMD  120
MEIQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAVAYDMA AIEYRGLHAV TNFDLSRYIK WLRPNNNTTT DTNSHHDAGG GSASLHHLQQ  240
PSDTTIAALP QPRTATSALG LLLQSSKFKE MTEMNLAAEY YCPSMHEQEY SDTLMQSSNT  300
ISDDDIKTYF ESNDFCEYNN EEGDEDIFGE LESFMHRSTY GSV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.11e-166AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A022RBN10.0A0A022RBN1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]