PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01109.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 36015.7 Da PI: 6.7984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.1e-18 | 148 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Migut.J01109.1.p 148 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAALAIKG 198 68*****998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 148 | 198 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-19 | 149 | 207 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.853 | 149 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 149 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-35 | 149 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-30 | 150 | 209 | No hit | No description |
PRINTS | PR00367 | 6.5E-10 | 150 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 172 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
EKGNLVAAAF FFSLQKPIYT IYIHTGKHTH KYHCLYHEAP IIIPFFFFFF FFFFFLTINF 60 IFIFFFLTRI LSSAKSSMAE PPNYAEHESG GKSSTTTTGS KHQLKRTRLI NSDDDDHPEV 120 INEVNKKSNT GNIINHNNNN NNNVSKHPVY RGVRMRAWGK WVSEIREPKK KSRIWLGTFA 180 TPEMAARAHD VAALAIKGGD SAILNFPELS HLLPRPATCS PRDVRDAANK AALMDHLHHR 240 DSSEEDVSTV APEELGEIVR LPSLLGTSCY ESAEDLVFSD DVGIGIGIGI GWDYYYINRP 300 LLEMSLDDDY NNVFFFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 145 | 207 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00467 | DAP | Transfer from AT4G32800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01109.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849481.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A2G9H814 | 3e-68 | A0A2G9H814_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 3e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01109.1.p |