PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00978.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 202aa    MW: 21278.5 Da    PI: 4.6385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00978.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-202778155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa+a++ a+++l+g
  Migut.J00978.1.p 27 SVYRGVRRRKSSGKWVSEIREP-----RtpNRIWLGTFPTPEMAAAAYDVAALALKG 78
                      78*******************9.....4478**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-182788No hitNo description
PfamPF008473.0E-132778IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-202788IPR016177DNA-binding domain
SMARTSM003801.5E-322892IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-282888IPR001471AP2/ERF domain
PRINTSPR003673.5E-52940IPR001471AP2/ERF domain
PRINTSPR003673.5E-55268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSQSPGGGSS SSVSPASDGG RRCRSPSVYR GVRRRKSSGK WVSEIREPRT PNRIWLGTFP  60
TPEMAAAAYD VAALALKGGE AQLNFPNSAS SLPVPASTSP RDIQAAAASA AAAAGAAVDA  120
FRAQPPEVPV SLDNNIDVID HGFVDEDLIF DLPNVLANMA EGLLISPPPS INYGFADHDN  180
NVDHGSYNNM EDAGYYLWNY Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1229881574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00978.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840082.11e-145PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR05e-49ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A022R5641e-116A0A022R564_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-41ERF family protein