PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00978.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21278.5 Da PI: 4.6385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 27 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr++k++g+Wv+eIr+p r r++lg+f t+e+Aa+a++ a+++l+g Migut.J00978.1.p 27 SVYRGVRRRKSSGKWVSEIREP-----RtpNRIWLGTFPTPEMAAAAYDVAALALKG 78 78*******************9.....4478**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-18 | 27 | 88 | No hit | No description |
Pfam | PF00847 | 3.0E-13 | 27 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 27 | 88 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-32 | 28 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 28 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 28 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSQSPGGGSS SSVSPASDGG RRCRSPSVYR GVRRRKSSGK WVSEIREPRT PNRIWLGTFP 60 TPEMAAAAYD VAALALKGGE AQLNFPNSAS SLPVPASTSP RDIQAAAASA AAAAGAAVDA 120 FRAQPPEVPV SLDNNIDVID HGFVDEDLIF DLPNVLANMA EGLLISPPPS INYGFADHDN 180 NVDHGSYNNM EDAGYYLWNY Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-12 | 29 | 88 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00978.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840082.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 5e-49 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A022R564 | 1e-116 | A0A022R564_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 5e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00978.1.p |