PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00955.1.p | ||||||||
Common Name | LOC105971045, MIMGU_mgv1a014546mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YA | ||||||||
Protein Properties | Length: 187aa MW: 20603 Da PI: 9.6269 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.7 | 1.9e-33 | 98 | 154 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rak+e+++kl k+rkpylheSRh+hAl+R Rg+gGrF Migut.J00955.1.p 98 DGPIYVNAKQYHGILRRRQTRAKMEAQNKL-VKNRKPYLHESRHQHALNRVRGTGGRF 154 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-36 | 96 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.263 | 97 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-24 | 100 | 122 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.3E-28 | 100 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-24 | 131 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGKTTSQDHS ASSDSAHDES YGKHGQDMKA ALFLCNPELS INASQAEINQ PIVQFPYAYA 60 DPYYSGLFTA YGPHNMIQPQ VMAAAAGRVP LPGDIPEDGP IYVNAKQYHG ILRRRQTRAK 120 MEAQNKLVKN RKPYLHESRH QHALNRVRGT GGRFLSSKKS QPSDSLPPTG SQINGGQDDQ 180 FRFNYG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-22 | 98 | 160 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00955.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851345.1 | 1e-137 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Swissprot | Q93ZH2 | 8e-39 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A022QE29 | 1e-136 | A0A022QE29_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00955.1.p | 1e-137 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 9e-41 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00955.1.p |
Entrez Gene | 105971045 |