PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00900.2.p

Common Name

MIMGU_mgv1a001352mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ARF

Protein Properties

Length: 795aa MW: 88713.9 Da PI: 6.847

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.8e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ + W++++iyr++++ry+lt+GW+ Fv++++L +gD+v+F + Migut.J00900.2.p 126 FCKTLTVSDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEISARDLHDQIWTFRHIYRGQPKRYLLTTGWSVFVSSKRLVAGDTVIFI--R 214 99***************************954.4444.48**********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++v+r+ Migut.J00900.2.p 215 DEKSQLRLGVRRA 227 5677789999987 PP
2	Auxin_resp	120.7	1.1e-39	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++++F+++YnPras+seFv++++k++k+++ +vs GmRf+m+fete+s rr++Gtv++v dldpvrW+nS+Wr+L+ Migut.J00900.2.p 252 AAHAAANSTPFTIFYNPRASPSEFVIPFAKYNKSMYAQVSSGMRFRMMFETEESGVRRYMGTVTSVCDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.83E-41	115	255	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.3E-41	119	241	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.82E-21	125	226	No hit	No description
PROSITE profile	PS50863	12.506	126	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-21	126	227	IPR003340	B3 DNA binding domain
SMART	SM01019	8.3E-23	126	228	IPR003340	B3 DNA binding domain
Pfam	PF06507	9.4E-35	252	334	IPR010525	Auxin response factor
PROSITE profile	PS51745	23.809	726	794	IPR000270	PB1 domain
SuperFamily	SSF54277	8.34E-6	730	794	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MKITSGELIS SAEGEKKKVM NSELWHACAG PLVSLPPVAS LVVYFPQGHS EQVAASMQKQ 60 AECIPSYPNL PSKLICMLHS VTLHADGETD EVYAQMTLQP VTKYDQEALL VSDIGLKHNR 120 QPTEFFCKTL TVSDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEISARD LHDQIWTFRH 180 IYRGQPKRYL LTTGWSVFVS SKRLVAGDTV IFIRDEKSQL RLGVRRANTQ QPALSSSVIS 240 SDSMHLGVLA AAAHAAANST PFTIFYNPRA SPSEFVIPFA KYNKSMYAQV SSGMRFRMMF 300 ETEESGVRRY MGTVTSVCDL DPVRWKNSQW RNLQVGWDES TAGDRPCRVS IWETEPVVTP 360 FYICPPPFFR PKFTTDDVSD MDNMFGLKDA SSSIFPGLNL VQLMNMQQNL GAHDHSKLLD 420 FQSPGLLPPN LRNHQNQQIG QIDQESTRNN TQQTSAYPQL ACNVQMPQNE LSYNRSALPM 480 NSTIRELSFK QFTESPSPSG IFQNRSQGQQ IIQFPELQSL SQRPIVGGPQ ASQLHRVSEQ 540 MQLLQKLHQQ QLPSPSINPV TDSQSKNDLQ NQTGPYALLG NALIHPLPNL SHSKIDVRIK 600 HELPKHKSAD MDAASSANSY HQQNSFPMNG FDGDVQSHGR NGFPFGATGI DGFAPDALLS 660 RGGFDSAKDN NMQNIETDLS SGINSQSFGV PIMSFKPGCS NDIAPLNETC VQNGGLWSNQ 720 TQQRMRTYTK VQKRGSVGRT IDVTRYKGYE ELRHDLARMF GIEGLLEDPQ RNEWKLVYID 780 HENDILLVGD DPWE*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MKITSGELIS SAEGEKKKVM NSELWHACAG PLVSLPPVAS LVVYFPQGHS EQVAASMQKQ  60
AECIPSYPNL PSKLICMLHS VTLHADGETD EVYAQMTLQP VTKYDQEALL VSDIGLKHNR  120
QPTEFFCKTL TVSDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEISARD LHDQIWTFRH  180
IYRGQPKRYL LTTGWSVFVS SKRLVAGDTV IFIRDEKSQL RLGVRRANTQ QPALSSSVIS  240
SDSMHLGVLA AAAHAAANST PFTIFYNPRA SPSEFVIPFA KYNKSMYAQV SSGMRFRMMF  300
ETEESGVRRY MGTVTSVCDL DPVRWKNSQW RNLQVGWDES TAGDRPCRVS IWETEPVVTP  360
FYICPPPFFR PKFTTDDVSD MDNMFGLKDA SSSIFPGLNL VQLMNMQQNL GAHDHSKLLD  420
FQSPGLLPPN LRNHQNQQIG QIDQESTRNN TQQTSAYPQL ACNVQMPQNE LSYNRSALPM  480
NSTIRELSFK QFTESPSPSG IFQNRSQGQQ IIQFPELQSL SQRPIVGGPQ ASQLHRVSEQ  540
MQLLQKLHQQ QLPSPSINPV TDSQSKNDLQ NQTGPYALLG NALIHPLPNL SHSKIDVRIK  600
HELPKHKSAD MDAASSANSY HQQNSFPMNG FDGDVQSHGR NGFPFGATGI DGFAPDALLS  660
RGGFDSAKDN NMQNIETDLS SGINSQSFGV PIMSFKPGCS NDIAPLNETC VQNGGLWSNQ  720
TQQRMRTYTK VQKRGSVGRT IDVTRYKGYE ELRHDLARMF GIEGLLEDPQ RNEWKLVYID  780
HENDILLVGD DPWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-166	7	355	38	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16461383, ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00900.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and ethylene. {ECO:0000269\|PubMed:16461383}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851206.1	0.0	PREDICTED: auxin response factor 19-like
Swissprot	Q8RYC8	0.0	ARFS_ARATH; Auxin response factor 19
TrEMBL	A0A022QH07	0.0	A0A022QH07_ERYGU; Auxin response factor

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Link Out ? help Back to Top
Phytozome	Migut.J00900.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Perilli S, et al. RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling. Plant Cell, 2013. 25(11): p. 4469-78 [PMID:24285791] Sun Y, et al. Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas. Sci Rep, 2017. 7: p. 40844 [PMID:28102350] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Olmo R, et al. Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program? Front Plant Sci, 2017. 8: p. 875 [PMID:28603536] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana. Plant Sci., 2017. 264: p. 168-178 [PMID:28969797] Nakamura M, et al. Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells. Plant Physiol., 2018. 176(1): p. 378-391 [PMID:29084900] Hong L, et al. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J., 2018. 93(2): p. 246-258 [PMID:29155478] Lee K,Park OS,Seo PJ Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Sci Signal, 2018. [PMID:29184030] Kimura T, et al. Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 823-835 [PMID:29401292] Schoenaers S, et al. The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth. Curr. Biol., 2018. 28(5): p. 722-732.e6 [PMID:29478854] Huang KL, et al. The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots. Plant Physiol., 2018. 178(1): p. 413-427 [PMID:30026290]