PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00900.1.p | ||||||||
Common Name | MIMGU_mgv1a001352mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 855aa MW: 95159.9 Da PI: 6.6747 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.1e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ + W++++iyr++++ry+lt+GW+ Fv++++L +gD+v+F + Migut.J00900.1.p 126 FCKTLTVSDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEISARDLHDQIWTFRHIYRGQPKRYLLTTGWSVFVSSKRLVAGDTVIFI--R 214 99*****************************954.4444.48************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++v+r+ Migut.J00900.1.p 215 DEKSQLRLGVRRA 227 5677789999987 PP | |||||||
2 | Auxin_resp | 120.6 | 1.2e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++++F+++YnPras+seFv++++k++k+++ +vs GmRf+m+fete+s rr++Gtv++v dldpvrW+nS+Wr+L+ Migut.J00900.1.p 252 AAHAAANSTPFTIFYNPRASPSEFVIPFAKYNKSMYAQVSSGMRFRMMFETEESGVRRYMGTVTSVCDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-41 | 115 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 119 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.39E-21 | 125 | 226 | No hit | No description |
PROSITE profile | PS50863 | 12.506 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.5E-10 | 718 | 813 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.484 | 726 | 819 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.32E-9 | 730 | 804 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MKITSGELIS SAEGEKKKVM NSELWHACAG PLVSLPPVAS LVVYFPQGHS EQVAASMQKQ 60 AECIPSYPNL PSKLICMLHS VTLHADGETD EVYAQMTLQP VTKYDQEALL VSDIGLKHNR 120 QPTEFFCKTL TVSDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEISARD LHDQIWTFRH 180 IYRGQPKRYL LTTGWSVFVS SKRLVAGDTV IFIRDEKSQL RLGVRRANTQ QPALSSSVIS 240 SDSMHLGVLA AAAHAAANST PFTIFYNPRA SPSEFVIPFA KYNKSMYAQV SSGMRFRMMF 300 ETEESGVRRY MGTVTSVCDL DPVRWKNSQW RNLQVGWDES TAGDRPCRVS IWETEPVVTP 360 FYICPPPFFR PKFTTDDVSD MDNMFGLKDA SSSIFPGLNL VQLMNMQQNL GAHDHSKLLD 420 FQSPGLLPPN LRNHQNQQIG QIDQESTRNN TQQTSAYPQL ACNVQMPQNE LSYNRSALPM 480 NSTIRELSFK QFTESPSPSG IFQNRSQGQQ IIQFPELQSL SQRPIVGGPQ ASQLHRVSEQ 540 MQLLQKLHQQ QLPSPSINPV TDSQSKNDLQ NQTGPYALLG NALIHPLPNL SHSKIDVRIK 600 HELPKHKSAD MDAASSANSY HQQNSFPMNG FDGDVQSHGR NGFPFGATGI DGFAPDALLS 660 RGGFDSAKDN NMQNIETDLS SGINSQSFGV PIMSFKPGCS NDIAPLNETC VQNGGLWSNQ 720 TQQRMRTYTK VQKRGSVGRT IDVTRYKGYE ELRHDLARMF GIEGLLEDPQ RNEWKLVYID 780 HENDILLVGD DPWEEFLSCV QSIKILSSSE VSQMSLDGDL GQIPVQTQAC SGTHSGNNAW 840 KSHYDDNSAS SFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-166 | 7 | 355 | 38 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851206.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A022QH07 | 0.0 | A0A022QH07_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00900.1.p |