PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00856.2.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

SBP

Protein Properties

Length: 209aa MW: 23649.7 Da PI: 9.247

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00856.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.4	2e-38	22	98	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl++akeyh rh++Ce+hsk+p v+v g e+rfCqqCs+ h+lsefD+ krsCrrrL++hn+rrr+ + Migut.J00856.2.p 22 CCQVEGCSVDLKSAKEYHGRHRICEFHSKSPRVVVGGFERRFCQQCSKLHDLSEFDDMKRSCRRRLSDHNARRRRVR 98 6*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-31	16	84	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.94	20	97	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.08E-36	21	102	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-30	23	96	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSSVPSSSKR SRAVHRSTQN PCCQVEGCSV DLKSAKEYHG RHRICEFHSK SPRVVVGGFE 60 RRFCQQCSKL HDLSEFDDMK RSCRRRLSDH NARRRRVRPE SIQLTSRGLS YGLYDQRPQN 120 ILMNGYPGGI FQETPRFSSN VIHSNSISNL HMDPPHPSNI SGVLDQFCIY SSFSDCSESF 180 KCSFFSVIKL VELERGRKID SHGGTNCA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-27	23	96	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00856.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851134.1	1e-119	PREDICTED: squamosa promoter-binding-like protein 12
Swissprot	A2YGR5	2e-39	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	2e-39	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A022QDS4	1e-118	A0A022QDS4_ERYGU; Uncharacterized protein
STRING	Migut.J00856.1.p	1e-119	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	7e-37	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Migut.J00856.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]