PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00664.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 364aa    MW: 39547.4 Da    PI: 7.6316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00664.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31053.8e-331162221100
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k ltpsdv+k++rlv+pk++ae+h       g + e++  l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+vvF +++
  Migut.J00664.1.p 116 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngggGDSGESGLLLGFEDEVGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVFARHR 208
                       99******************************8555568889************************************************887 PP

                       SSEE..EEEEE-SS CS
                B3  87 rsefelvvkvfrks 100
                        ++++l+++++r++
  Migut.J00664.1.p 209 VDSGRLFIGWRRRN 222
                       7**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-39109225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-30113221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-28114211No hitNo description
PROSITE profilePS5086314.593116222IPR003340B3 DNA binding domain
SMARTSM010195.5E-25116222IPR003340B3 DNA binding domain
PfamPF023628.8E-30116222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSINHYSSEI PETQWWSLHH RATMDSSPKT TSSSSSNNHH HKASDDNSAS FWLSPHQLYS  60
TASAGGAMFC RQNAAAAGGF DLNNNNEDED GDAVTTKDSV VEKSELGGII PKDRLFEKPL  120
TPSDVGKLNR LVIPKQHAEK HFPLNGGGGD SGESGLLLGF EDEVGKAWRF RYSYWNSSQS  180
YVLTKGWSRF VKEKRLDAGD IVVFARHRVD SGRLFIGWRR RNSTAAAGQD AAAASQPAAP  240
SSGTPSGGAG GVWNRAAAFY SAQPYPISRG QYQITPSSPL PNHSLHPGSV PVVQKQTTGS  300
GNPKRLRLFG VNMECQLADD VSDPSTPVMS TQGHPHHPYH NHHHYNHMDI SFSGGNDDVY  360
RQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-481122214113B3 domain-containing transcription factor NGA1
5os9_B4e-481122214113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00664.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828697.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-67Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A2G9HGL21e-108A0A2G9HGL2_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-57B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]