PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00631.1.p | ||||||||
Common Name | LOC105966466, MIMGU_mgv1a023404mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 86aa MW: 9879.26 Da PI: 6.7964 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42 | 2.6e-13 | 1 | 62 | 39 | 100 |
DUF260 39 asnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++n+lk+lk+++e+er+++++sl++eA++r++ Pv+G ++v +kl+ ++e++++el+ ++++ Migut.J00631.1.p 1 MQNMLKILKSVDEDERDTTIESLIMEARMRLEYPVHGHFSVARKLSFEIEKAEKELEIVRQK 62 589******************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.146 | 1 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-11 | 2 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MQNMLKILKS VDEDERDTTI ESLIMEARMR LEYPVHGHFS VARKLSFEIE KAEKELEIVR 60 QKNHICKGAD NRASPSTREG RPDQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00631.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846478.1 | 5e-55 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A022RZR7 | 1e-53 | A0A022RZR7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00631.1.p | 6e-57 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-09 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00631.1.p |
Entrez Gene | 105966466 |