PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00581.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 792aa    MW: 87795.6 Da    PI: 6.5558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00581.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.2e-06504524525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C  +     C++G++C+F+H
  Migut.J00581.1.p 504 PCTKYITDNSCPRGSNCSFSH 524
                       699999999************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.24445471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807445472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5446470IPR000571Zinc finger, CCCH-type
SMARTSM003560.0052474500IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479474501IPR000571Zinc finger, CCCH-type
SMARTSM003562.4502526IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5503528IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925504527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4504525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MKKKKSLFQR IIYAHRPSAI TEANLTPPPS TQPSSAQPEN SNPPNGAVLM EDSSAQRQNL  60
ALNPSNTNYT FPPHRRRPLR SRTYRALIGI MSHSRVDSTH LQKQVDSDDS VLRPAFQENR  120
LTARNEVNSV DVLAPDPNSK VPEDTLVQET TVGENREKLC FQDGVIDCIN TTESKVDHVK  180
VVKDVEHEGS RNLSVVENQM DDFDFHVSKD QENANGVDIQ MEGLEVDKDF CIGDFSEALD  240
SCFDMDTVVE LSKSGEEGQE NHMVLEENKP KETECQLKVK EMELEKLVHN SAVVEPSCCL  300
NADGDMEEGE ISGEDEFVDA PFDALSEFAV HASDGSFDKE KDICNNEDRG RETTDPSLVN  360
VVNSDTDFME VESITPFGKM QENAAEDQIC ATTEKDQDLG KKKRKKGPLT KERRAKKKKK  420
ERIKRAEKNR EDGVRRANPQ PIIKPKKISE CRHYKYGRCY EGEKCKFSHD TVPLTKSTPC  480
AYFARNSCMK GKDCPFDHEL SKYPCTKYIT DNSCPRGSNC SFSHEKPAKQ NFSITPNTSS  540
VPELTSPQHT VPDKRRSSTE SKATKPELKF STPPNNTNTI KQTDNYGIHH QRSNGKSTDP  600
LPMNPVTRTV RQPPRGVSFL STGEKSSGES SKHKVGELSV KTTNGVDAGC KTSLDKSNEM  660
SEKVAPRKPR GINFLSFAQP SSDNSSSNIF SNLPLSNSKS GTSVINGTNE GKLTSSLLEN  720
DGALKANRQD TIQIPSLSFG GQNSHFSSSF KTSLLSNTPS SVQNAIQSTL AFAEKFEPDI  780
KVGSYLNQLR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401405KKRKK
2403419RKKGPLTKERRAKKKKK
3412420RRAKKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00581.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848344.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like
TrEMBLA0A2G9HZN30.0A0A2G9HZN3_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720