PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00534.1.p
Common NameLOC105961239, MIMGU_mgv1a002753mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 642aa    MW: 70395.6 Da    PI: 7.0329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00534.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24122223199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  +
  Migut.J00534.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysSDPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFM--R 210
                       89****************************995444444..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Migut.J00534.1.p 211 AENGDLCVGIRRA 223
                       488999****997 PP
2Auxin_resp110.81.4e-36284366283
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+  +++ +FevvY+Prast+eF+v+++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Migut.J00534.1.p 284 ATLGASGRPFEVVYYPRASTPEFCVRASLVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISAVHVADPIRWPDSPWRLLQ 366
                       66778999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-38113226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29116233IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-21121222No hitNo description
PfamPF023621.3E-22122223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225122224IPR003340B3 DNA binding domain
SMARTSM010195.1E-22122224IPR003340B3 DNA binding domain
PfamPF065073.9E-31284366IPR010525Auxin response factor
PROSITE profilePS5174516.46554632IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MITFMESKEK MKETEKCLDS QLWHACAGSM VQMPSVNSKV FYFPQGHSEH ASGIVDLRTC  60
PKIPSYIPSR VTAVKFMADP ETDEVFAKIH LVPITGNEVV FDDHDAAAVG GGSENQEKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSSDPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFMR AENGDLCVGI RRAKRGIGGS EAATGWNPAG  240
GNPAVPYGGL SAFFREDEGK LSRNSNGDSI SSGRVKPEAV IEAATLGASG RPFEVVYYPR  300
ASTPEFCVRA SLVKAALQIR WCSGMRFKMP FETEDSSRIS WFMGTISAVH VADPIRWPDS  360
PWRLLQVAWD EPDLLQNVKR VSPWLVELVS SMPPIHHHNL SPFSPPRKKM RLPFDGQIPL  420
PAFSGNPFGC LPNNNNNNTP AGMQGARHGL SLSDLFPAGF MPLNRVPLPS TTANNENVSC  480
QLTMGNSNRG SKVSDNCKTA PFVLFGRPIL TEKQISLSGC SSDTRTGNSS SDGNEGKLGN  540
NSDEGFQSEL DLETGHCKVF MESEDVGRTL DLSLLGSYEE LYEKLGSMFG VEISEIMNRV  600
IYRDATGAVR QIGDESFSDF LKTARRLRIV ADTNKCKSVD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-84338732388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00534.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367354e-44KX036735.1 Salvia miltiorrhiza auxin response factor ARF15 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840931.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A022R6H10.0A0A022R6H1_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]