PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00491.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 229aa    MW: 26384.7 Da    PI: 6.817
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-2067119456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  Migut.J00491.1.p  67 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 119
                       55699***********************************************9 PP
2HD-ZIP_I/II122.81.7e-3966157293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda+++++++L++ev +Lr+ lke
  Migut.J00491.1.p  66 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDAVSRDKHKLQQEVLALRAMLKE 157
                       9**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2048122IPR009057Homeodomain-like
PROSITE profilePS5007117.03861121IPR001356Homeobox domain
SMARTSM003893.5E-1864125IPR001356Homeobox domain
CDDcd000869.47E-1766122No hitNo description
PfamPF000462.9E-1767119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-2168128IPR009057Homeodomain-like
PRINTSPR000316.7E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000316.7E-6101117IPR000047Helix-turn-helix motif
PfamPF021831.1E-7121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDWNGNNLRV PLVSRPENSA FSFLYNYNYD HFSEMKQPSM QNTMVPTTTD KNNTSMMSMM  60
YGQDPKKKRL STEQLESLEN SFQEEIKLDP DRKMKLAKEL GLQPRQIAVW FQNRRARWKG  120
KQLERLYDAL KQEYDAVSRD KHKLQQEVLA LRAMLKEQVV NKQVSTGYTE VSGEETVEST  180
SIPNSDKAHG ITTTTSINNV NQIIMGESSY ALNVDDYTSV MMTPYNWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKGKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831797.11e-171PREDICTED: homeobox-leucine zipper protein ATHB-22
SwissprotQ9LZR06e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2G9FWF51e-112A0A2G9FWF5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.19e-49homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]