PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00446.1.p
Common NameLOC105952772, MIMGU_mgv1a020315mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 206aa    MW: 23790.6 Da    PI: 4.5735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00446.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-15855148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W +eEde+l  av+ +G ++W++ a+  g++R +k+c++rw +yl
  Migut.J00446.1.p  8 KGPWLEEEDEQLSAAVAVFGDKRWDALAKSSGLRRNGKSCRLRWMNYL 55
                      79********************************************97 PP
2Myb_DNA-binding52.31.3e-1662106248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       g+ +++E+ +++++++++G++ W+ Iar+++ gRt++++k++w++yl
  Migut.J00446.1.p  62 GNISADEERIIIQLHEKWGNK-WSMIARRLP-GRTDNEIKNYWRSYL 106
                       67799****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.278155IPR017930Myb domain
SuperFamilySSF466896.25E-285102IPR009057Homeodomain-like
SMARTSM007174.8E-13757IPR001005SANT/Myb domain
PfamPF002493.7E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-21962IPR009057Homeodomain-like
CDDcd001673.22E-91055No hitNo description
PROSITE profilePS5129426.556110IPR017930Myb domain
SMARTSM007179.2E-1660108IPR001005SANT/Myb domain
PfamPF002491.4E-1462106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2463109IPR009057Homeodomain-like
CDDcd001673.32E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MQEVELRKGP WLEEEDEQLS AAVAVFGDKR WDALAKSSGL RRNGKSCRLR WMNYLRPNLK  60
HGNISADEER IIIQLHEKWG NKWSMIARRL PGRTDNEIKN YWRSYLKKKA LALDKECLSS  120
TTNTCLRSEE CETDSPCSVN DEIVGPTTDS SDALDIMLNM TSSPYETRLT EWMMSSNCDK  180
DEFSNYDLCF SDDYATWDFS LWDGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2851101105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-27511055159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27511055159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-27511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00446.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831805.11e-151PREDICTED: myb-related protein MYBAS2-like
SwissprotQ9SCP14e-52MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A022RNP11e-149A0A022RNP1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-54myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]