PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00338.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Dof

Protein Properties

Length: 385aa MW: 40912.6 Da PI: 10.5249

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00338.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	93	152	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCds+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Migut.J00338.1.p 93 ETCLKCPRCDSANTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 152 6679*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	76	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	95	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.562	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MLSWFSFFAR KKQKRKIQKT NIPMQQSHQI IGRSSSSGNP LLPPPPQPPG PPQQGPPPPP 60 QHPQQPHGGG GAGSVRPGSM SERARMANIP MPETCLKCPR CDSANTKFCY FNNYSLTQPR 120 HFCKTCRRYW TRGGALRNVP VGGGCRRNKR SKSSSSSKSP ASSERQTSTN PTSTSTISTN 180 NGGAAANNNM LPPLRFMSPL GQLTTDNFAG DMGLNYSGMT TAAPLVGTTH EMNFHGITSN 240 LMGPTGGLAA SLMSSGDHGG GSIEPWRLQQ VQQFPFFGGG LDPTSPGMYQ FYGGESGFMG 300 GGLQGGGSHN QVRGNNKGSS SSSVKMEENP AELNLSRQLL GGFMAAGNHE QWINNNTSNI 360 STPAVNWTEL SSNNFSSSST SNPV*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MLSWFSFFAR KKQKRKIQKT NIPMQQSHQI IGRSSSSGNP LLPPPPQPPG PPQQGPPPPP  60
QHPQQPHGGG GAGSVRPGSM SERARMANIP MPETCLKCPR CDSANTKFCY FNNYSLTQPR  120
HFCKTCRRYW TRGGALRNVP VGGGCRRNKR SKSSSSSKSP ASSERQTSTN PTSTSTISTN  180
NGGAAANNNM LPPLRFMSPL GQLTTDNFAG DMGLNYSGMT TAAPLVGTTH EMNFHGITSN  240
LMGPTGGLAA SLMSSGDHGG GSIEPWRLQQ VQQFPFFGGG LDPTSPGMYQ FYGGESGFMG  300
GGLQGGGSHN QVRGNNKGSS SSSVKMEENP AELNLSRQLL GGFMAAGNHE QWINNNTSNI  360
STPAVNWTEL SSNNFSSSST SNPV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	307	SGFMGGGLQGGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00338.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012832004.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like isoform X1
TrEMBL	A0A022RS10	1e-154	A0A022RS10_ERYGU; Uncharacterized protein
STRING	Migut.J00338.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Migut.J00338.1.p