PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00247.1.p
Common NameMIMGU_mgv1a023010mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 400aa    MW: 43138.1 Da    PI: 5.1875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-174388147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Migut.J00247.1.p 43 KGPWSPDEDAMLSQLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 88
                      79******************************.***********985 PP
2Myb_DNA-binding59.28.9e-1995139147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r+++T eEd  +++a++ +G++ W++Iar m+ gRt++ +k++w++ 
  Migut.J00247.1.p  95 RKPFTDEEDRMILQAHAIHGNR-WASIARLMP-GRTDNAIKNHWNST 139
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7123889IPR017930Myb domain
SuperFamilySSF466896.47E-3140136IPR009057Homeodomain-like
SMARTSM007173.5E-144291IPR001005SANT/Myb domain
PfamPF002494.1E-164388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-264496IPR009057Homeodomain-like
CDDcd001671.50E-134587No hitNo description
PROSITE profilePS5129427.57990144IPR017930Myb domain
SMARTSM007172.5E-1894142IPR001005SANT/Myb domain
PfamPF002493.5E-1695139IPR001005SANT/Myb domain
CDDcd001673.44E-1497140No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2497143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEIDTQAPVE MHAHAGGGGE EDALVVLGGG GGRASKRSLD RVKGPWSPDE DAMLSQLVSN  60
FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMILQAH AIHGNRWASI  120
ARLMPGRTDN AIKNHWNSTL RRRCMGIGKP IPMLESTNMV EDTSFEKSKA DSEETPSCGD  180
ANSVRSYEGK DEGKDATSSF ELIEDNEEKA QSQVQLNDKS IPPPPLFRPV ARISAFNVYN  240
NSVDGAENVS PSPRLPFLQT SNSEVGTCKS KSLERLVGDI LVPHRCGHGC CENPGGVTSL  300
LGPEFIDYTT PPSFTSHDLA ALAADISNVA WSKSGLESST IKAMENMASG LSCSSQQTGH  360
FEDSGENENS SSDMGKNELI STPMIRQPVL LAHNEVGSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-41401434107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00247.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832083.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB59
SwissprotQ425752e-92MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A022RMW20.0A0A022RMW2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.17e-95myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]