PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00040.2.p
Common NameLOC105953185, MIMGU_mgv1a001444mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 700aa    MW: 78049 Da    PI: 6.9551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18150250199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Migut.J00040.2.p 150 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVRGKEWVFQFRFwpNNNSRMYVLE-GVTPCIHSMQLQAGDTVTFSRMD-PE 240
                       99**************************555567778***************9989999999***9.********************876.88 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                       ++l+++++++
  Migut.J00040.2.p 241 GKLLMGFRKA 250
                       8888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-29142252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-19147249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-22148249No hitNo description
PfamPF023628.5E-16150250IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039150251IPR003340B3 DNA binding domain
SMARTSM010191.0E-20150251IPR003340B3 DNA binding domain
PROSITE profilePS5105013.308397446IPR011124Zinc finger, CW-type
PfamPF074966.2E-8402443IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MGPAQPGDGA ENDGQEQRLP PSLNNALQES NSAKRVNESL VQTNLSISLS ASSNSGVFAE  60
ERQLSTAVSS FQQGCGPRHL LPRLLPNSIL SAGLGLETNS SNNISQLRVA RPPVEGRVKN  120
QLLPRYWPRI TDQELKQISG DSNSTIIPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS  180
QPEGLPLRIQ DVRGKEWVFQ FRFWPNNNSR MYVLEGVTPC IHSMQLQAGD TVTFSRMDPE  240
GKLLMGFRKA SNNVSVQKDS HYSMNNGAFQ GERFFGNAEN NLPIMSGYSG LLHSLKGSKN  300
SSMPTLSKHV YAGDNPLSES SLLPERKRRN IGPKSKRLLI DGHDSLEIRI SWEEVQDMLR  360
APPSVEPSIV SVEDHEFEEF EEPPVFAKRS IFVVRLSGEH EQWTQCDDCF KWRKMPIDIL  420
LPPKWTCQDN IDQTRCSCSA QDELCSSEIE NLLKMNEDLT KRRFQTSLNK PMYENKSQDQ  480
ETPTINAGGE TSQPVTSSIA TTTKHPRHRP GCSCIVCIQP PSGKGKHKPT CTCNVCMTVK  540
RRFKTLMMRK KKRQSDREAE IIMAQRNNQF PTSASAKDEA EVDHSTNPNI NNTQVSLQFV  600
PSDDARRSET DILSTRNSEI FKGGLDLNSC PVREITAPPR VSMTSLLLEA SLPLDTYLKQ  660
NGLTSLLTEQ QAVSSPRVEN MEEHSNDLSE KDQIEKDPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-691282572131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539550KRRFKTLMMRKK
2539552KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00040.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832273.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A022RSY60.0A0A022RSY6_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]