PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00040.1.p
Common NameLOC105953185, MIMGU_mgv1a001444mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 820aa    MW: 91126.9 Da    PI: 6.5989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.7e-18270370199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Migut.J00040.1.p 270 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVRGKEWVFQFRFwpNNNSRMYVLE-GVTPCIHSMQLQAGDTVTFSRMD-PE 360
                       99**************************555567778***************9989999999***9.********************876.88 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                       ++l+++++++
  Migut.J00040.1.p 361 GKLLMGFRKA 370
                       8888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-29262372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19267369IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-22268369No hitNo description
PROSITE profilePS5086311.039270371IPR003340B3 DNA binding domain
SMARTSM010191.0E-20270371IPR003340B3 DNA binding domain
PfamPF023621.1E-15270370IPR003340B3 DNA binding domain
PROSITE profilePS5105013.308517566IPR011124Zinc finger, CW-type
PfamPF074967.6E-8522563IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MECMNGLCAS SNSIEWENGW PLQSGGFATL CLNCGSAYKQ FVFCETFHSE ETGWRECTSC  60
GKRLHCGCIA STSLLELLET GGVSCKACII KNSKIPSTPK EKHQACALST ENFIDQNLET  120
MGPAQPGDGA ENDGQEQRLP PSLNNALQES NSAKRVNESL VQTNLSISLS ASSNSGVFAE  180
ERQLSTAVSS FQQGCGPRHL LPRLLPNSIL SAGLGLETNS SNNISQLRVA RPPVEGRVKN  240
QLLPRYWPRI TDQELKQISG DSNSTIIPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS  300
QPEGLPLRIQ DVRGKEWVFQ FRFWPNNNSR MYVLEGVTPC IHSMQLQAGD TVTFSRMDPE  360
GKLLMGFRKA SNNVSVQKDS HYSMNNGAFQ GERFFGNAEN NLPIMSGYSG LLHSLKGSKN  420
SSMPTLSKHV YAGDNPLSES SLLPERKRRN IGPKSKRLLI DGHDSLEIRI SWEEVQDMLR  480
APPSVEPSIV SVEDHEFEEF EEPPVFAKRS IFVVRLSGEH EQWTQCDDCF KWRKMPIDIL  540
LPPKWTCQDN IDQTRCSCSA QDELCSSEIE NLLKMNEDLT KRRFQTSLNK PMYENKSQDQ  600
ETPTINAGGE TSQPVTSSIA TTTKHPRHRP GCSCIVCIQP PSGKGKHKPT CTCNVCMTVK  660
RRFKTLMMRK KKRQSDREAE IIMAQRNNQF PTSASAKDEA EVDHSTNPNI NNTQVSLQFV  720
PSDDARRSET DILSTRNSEI FKGGLDLNSC PVREITAPPR VSMTSLLLEA SLPLDTYLKQ  780
NGLTSLLTEQ QAVSSPRVEN MEEHSNDLSE KDQIEKDPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-682483772131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1659670KRRFKTLMMRKK
2659672KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832273.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
TrEMBLA0A022RSY60.0A0A022RSY6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1